I have experienced a similar situation with my own Civic. The original coil went; I replaced it and it ran fine for about 2k miles before stalling in a busy intersection. I traced it back to the coil again. I replaced the coil, rotor and cap; it has been running great ever since. I would check the distributor gasket. I found that they tend to pinch in sometimes and the moisture that seeps in tends to prematurely age your coil so to speak. What coil brand and igniter did you use the lat time you changed them?
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- replaced alternator…now no spark